Publications

You can also find my articles on my Google Scholar profile.

Journal Articles

Predicting Early Transitions in Respiratory Virus Infections via Critical Transient Gene Interactions

Published in bioRxiv, 2025

Authors: Chengshang LYU^#, Anna JIANG, Ka Ho NG, Xiaoyu LIU, Lingxi CHEN^*.

Knowledge-driven annotation for gene interaction enrichment analysis

Published in bioRxiv, 2025

Authors: Xiaoyu LIU^#, Anna JIANG^#, Chengshang LYU, Lingxi CHEN^*.

Predicting T Cell Mitochondria Hijacking from Tumor Single-Cell RNA Sequencing Data with MitoR

Published in Mathematics, 2025

Authors: Anna Jiang^#, Chengshang Lyu^#, Yue Zhao^*.

CIDER: Counterfactual-Invariant Diffusion-based GNN Explainer for Causal Subgraph Inference

Published in arXiv, 2024

Authors: Qibin Zhang^#, Chengshang LYU, Lingxi CHEN, Qiqi Jin, Luonan Chen^*.

Detecting Critical States and Tipping Points in Complex Diseases using Network Information Entropy of Edges

Published in Briefings in Bioinformatics, 2024

Authors: Chengshang Lyu^#, Lingxi Chen, Xiaoping Liu^*.

ATP11B-related Mitochondrial Dysfunction Serves as an Early Alert of Alzheimer’s Disease

Published in Under Review, 2024

Authors: Jiao Wang^#, Shibo Zhang^#, Qian Li^#, Ruiqi Sun^#, Wenxin Qi^#, Naijun Dong^#, Chengshang LYU, Xiaoping Liu, Hao Wu, Jianxin Zhou, Hongwei Shi, Cuiping Liu, Junyi Zhuang, Peiru Wu, Lin Huang, Jintao Gong, Shuaijing Ma, Di Li, Xingyan An, Wanwei Zhao, Xuanting Liu, Qin Han, Rongjia Zhu, Shihua Wang, Hongling Li, Jing Li, Tieqiao Wen, Evelyne Bischof, Luonan Chen^*, Robert Chunhua Zhao^*.

Patents

一种基于网络信息熵的关键基因预测方法

Published in Chinese Patent, 2024

Authors: 刘小平;吕承尚.